Comet parameter: peff_verbose_output

• Specifies whether the verbose output is reported during a PEFF search. Examples of the reporting includes not finding an entry in the OBO file, amino acid variant same as original residue, invalid mod/variant amino acid position, etc.
• Valid values are 0 and 1.
• To suppress verbose output, set the value to 0.
• To show verbose output, set the value to 1.
• The default value is “0” if this parameter is missing.
• This is a hidden parameter that is not included in the parameters file generated by “comet -p”. You must manually add this parameter if you want to set it.

Example:

peff_verbose_output = 1