Comet parameter: fragindex_min_ions_report

• This parameter sets the minimum number fragment ions a peptide must match against the fragment ion index in order to report this peptide in the output.
• This parameter value could be different (typically same or larger) than the fragindex_min_ions_score parameter.
• Any peptide that passes this filter is a candidate to be reported in the output list, assuming it scores high enough.
• Valid values are a positive integer, 1 or larger.

Example:

fragindex_min_ions_report = 3